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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

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        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.21

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-07-24, 14:24 BST based on data in: /Users/goldriev/pkgs/vsgseq2/work/6b/dfa80dc8ac6fbecc5ae5552e84fac7

        General Statistics

        Showing 6/6 rows and 5/5 columns.
        Sample Name% AlignedM AlignedLibrary typesCFRM Bias
        early_1_1
        41.5%
        0.0M
        		IU
        100.0%
        0.5
        early_2_1
        41.4%
        0.0M
        		IU
        100.0%
        0.5
        earlysingle
        44.6%
        0.0M
        		U
        100.0%
        0.5
        late_1_1
        57.1%
        0.1M
        		IU
        100.0%
        0.5
        late_2_1
        57.3%
        0.1M
        		IU
        100.0%
        0.5
        latesingle
        61.4%
        0.1M
        		U
        100.0%
        0.5

        Salmon

        Version: 1.10.3

        Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.DOI: 10.1038/nmeth.4197.

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Salmon1.10.3

        MultiQC v1.21 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.